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Ref culling kmer generation

Ghost User requested to merge ref-culling/get-kmers into develop/ref-culling

Implemented reference culling section that will:

  • Download reference fasta files from NCBI
  • Generate kmers from input reads and reference files

Scripts modified:

  • metacompass.nf - Add arg to calling ref_culling.nf
  • ref_culling.nf - Processes to download references and generate kmers

Scripts added:

  • collect_kmers.sh - Script that generates kmers from reads and references

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